Well, I've only ever seen* the version included with the "Entire Mystery" blu-ray release and apparently a fresh 4K scan was done for this, with Lynch's approval. It's this very same scan that Criterion licensed for their release. Apparently it's identical, other than that they've also issued a UHD (4K) version.
Apart from this, and a couple of dubbed versions, the only alternative in the wild is (according to IMDB) an "unofficially released extended cut of the film titled 'Twin Peaks: Fire Walk With Me - The Extended Blue Rose Cut' which restores an hour of deleted footage formerly only found as bonus content on previous releases. This edition of the movie has a 196-minute runtime."
I can knock up a copy of what I have and post it somewhere you can see if you're interested in a comparison.
Edit: not true. I did watch it years and years ago, but didn't remember much when I watched my current version (which was when I put it on Plex).
EDITED: 26 Aug 2022 11:01 by WILLIAMA